Variant report

Variant	rs59373873
Chromosome Location	chr14:97452642-97452643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97450949..97452696-chr14:97456362..97458662,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10147597	0.87[ASN][1000 genomes]
rs10150685	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10150869	0.81[ASN][1000 genomes]
rs17094640	0.84[AMR][1000 genomes]
rs17094645	0.80[AMR][1000 genomes]
rs17094648	0.89[AMR][1000 genomes]
rs17094651	0.89[AMR][1000 genomes]
rs17094663	0.80[ASN][1000 genomes]
rs17094665	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17094678	0.88[ASN][1000 genomes]
rs17094682	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17094734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17094747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57672244	0.84[AMR][1000 genomes]
rs58881967	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60006953	0.87[ASN][1000 genomes]
rs856256	0.82[ASN][1000 genomes]
rs856263	0.88[ASN][1000 genomes]
rs856264	0.85[ASN][1000 genomes]
rs856265	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97452000-97453400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr14:97452000-97456000	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:97452200-97455200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr14:97452400-97454200	Enhancers	Primary T cells from cord blood	blood
5	chr14:97452400-97455000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr14:97452400-97455600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:97452400-97456200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:97452600-97454400	Enhancers	Primary B cells from cord blood	blood
9	chr14:97452600-97454600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:97452600-97454600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:97452600-97456200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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