Variant report

Variant	rs856263
Chromosome Location	chr14:97426365-97426366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10147597	0.99[ASN][1000 genomes]
rs10150685	0.99[ASN][1000 genomes]
rs10150869	0.92[ASN][1000 genomes]
rs17094651	0.90[JPT][hapmap]
rs17094663	0.91[ASN][1000 genomes]
rs17094665	0.91[ASN][1000 genomes]
rs17094678	1.00[ASN][1000 genomes]
rs17094682	1.00[ASN][1000 genomes]
rs17094734	1.00[ASN][1000 genomes]
rs17094747	0.90[ASN][1000 genomes]
rs28363869	0.89[ASN][1000 genomes]
rs57672244	0.87[ASN][1000 genomes]
rs58881967	0.96[ASN][1000 genomes]
rs59373873	0.88[ASN][1000 genomes]
rs60006953	0.99[ASN][1000 genomes]
rs856252	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs856256	0.93[ASN][1000 genomes]
rs856264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs856265	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs856270	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv988078	chr14:97421582-97430696	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs856263	VRK1	cis	parietal	SCAN
rs856263	PAPOLA	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
2	chr14:97417800-97426400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:97420200-97430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:97420600-97426600	Weak transcription	Dnd41	blood
5	chr14:97425000-97426600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:97425400-97427000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:97425600-97428600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr14:97426000-97428200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr14:97426200-97426400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:97426200-97427400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:97426200-97431400	Enhancers	Primary T helper cells fromperipheralblood	blood

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