Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97397690..97400438-chr14:97408446..97410821,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VRK1-1	chr14:97409976-97410017	ENSG00000225163.3
2	lnc-VRK1-1	chr14:97409916-97410017	ENSG00000225163.3
3	lnc-ATG2B-3	chr14:97409902-97410017	NONHSAT039555
4	lnc-VRK1-1	chr14:97409916-97410017	NR_104113

Variant related genes	Relation type
ENSG00000258825	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10147597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10150685	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150869	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094640	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094645	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094648	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094663	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094678	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094734	0.89[AMR][1000 genomes]
rs17094747	0.89[AMR][1000 genomes]
rs28363869	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57672244	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58881967	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59373873	0.89[AMR][1000 genomes]
rs60006953	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs746127	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs8015032	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs856256	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:97398000-97412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:97404600-97410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
5	chr14:97409600-97419000	Strong transcription	Dnd41	blood

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