Variant report

Variant	rs17094665
Chromosome Location	chr14:97412941-97412942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10147597	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150685	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150869	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12434466	0.87[TSI][hapmap]
rs17094640	0.97[EUR][1000 genomes]
rs17094645	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes]
rs17094648	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094651	1.00[CEU][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17094663	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094678	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17094682	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17094734	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17094747	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28363869	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57672244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58881967	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59373873	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs60006953	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs746127	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs8015032	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs856256	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs856263	0.91[ASN][1000 genomes]
rs856264	0.95[ASN][1000 genomes]
rs856265	0.93[ASN][1000 genomes]
rs856270	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
2	chr14:97409600-97419000	Strong transcription	Dnd41	blood
3	chr14:97411200-97415400	Weak transcription	Primary B cells from cord blood	blood
4	chr14:97412200-97415800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:97412200-97415800	Weak transcription	GM12878-XiMat	blood
6	chr14:97412400-97415600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:97412400-97415600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:97412400-97415600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:97412400-97415800	Weak transcription	Primary T cells from cord blood	blood
10	chr14:97412400-97415800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:97412400-97415800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:97412600-97415800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:97412600-97415800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:97412600-97415800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr14:97412600-97415800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr14:97412800-97415400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:97412800-97415800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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