Variant report

Variant	rs17099030
Chromosome Location	chr11:102484141-102484142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102482496..102484239-chr11:102491077..102493639,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17093627	1.00[AMR][1000 genomes]
rs17099014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099170	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17174309	1.00[AMR][1000 genomes]
rs17174349	1.00[AMR][1000 genomes]
rs7342216	1.00[AMR][1000 genomes]
rs73582620	1.00[AMR][1000 genomes]
rs73584618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
3	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:102476000-102484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:102478600-102486200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:102483400-102484400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:102483600-102484200	Enhancers	Primary B cells from cord blood	blood
10	chr11:102483600-102484400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:102483600-102486200	Enhancers	HepG2	liver
12	chr11:102483800-102484400	Flanking Active TSS	GM12878-XiMat	blood
13	chr11:102483800-102484600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:102483800-102484600	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:102483800-102484800	Enhancers	Liver	Liver
16	chr11:102483800-102487000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:102484000-102484200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:102484000-102484200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr11:102484000-102484200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr11:102484000-102484200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:102484000-102484200	Enhancers	Brain Anterior Caudate	brain
22	chr11:102484000-102484400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:102484000-102484400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:102484000-102484600	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr11:102484000-102484800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr11:102484000-102484800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:102484000-102485600	Enhancers	Fetal Intestine Large	intestine
28	chr11:102484000-102485600	Enhancers	Fetal Intestine Small	intestine
29	chr11:102484000-102485800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:102484000-102486200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:102484000-102486400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr11:102484000-102486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr11:102484000-102486600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:102484000-102486600	Weak transcription	Hela-S3	cervix
35	chr11:102484000-102487200	Enhancers	A549	lung

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