Variant report

Variant	rs17099170
Chromosome Location	chr11:102497458-102497459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17093627	1.00[AMR][1000 genomes]
rs17099014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099030	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099059	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099071	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099076	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099093	1.00[AMR][1000 genomes]
rs17099113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17174309	1.00[AMR][1000 genomes]
rs17174349	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7342216	1.00[AMR][1000 genomes]
rs73582620	1.00[AMR][1000 genomes]
rs73584618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102493800-102501600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:102496600-102499800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:102496600-102501600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102496800-102500600	Weak transcription	HepG2	liver
5	chr11:102497200-102497600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:102497200-102498200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links