Variant report

Variant	rs17174309
Chromosome Location	chr11:102463630-102463631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17093627	1.00[AMR][1000 genomes]
rs17099014	1.00[AMR][1000 genomes]
rs17099030	1.00[AMR][1000 genomes]
rs17099032	1.00[AMR][1000 genomes]
rs17099053	1.00[AMR][1000 genomes]
rs17099059	1.00[AMR][1000 genomes]
rs17099071	1.00[AMR][1000 genomes]
rs17099076	1.00[AMR][1000 genomes]
rs17099085	1.00[AMR][1000 genomes]
rs17099087	1.00[AMR][1000 genomes]
rs17099093	1.00[AMR][1000 genomes]
rs17099113	1.00[AMR][1000 genomes]
rs17099119	1.00[AMR][1000 genomes]
rs17099170	1.00[AMR][1000 genomes]
rs17174349	1.00[AMR][1000 genomes]
rs7342216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582620	1.00[AMR][1000 genomes]
rs73584618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102460200-102463800	Enhancers	GM12878-XiMat	blood
2	chr11:102462200-102463800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:102462200-102464200	Enhancers	HMEC	breast
4	chr11:102462200-102470000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:102462600-102463800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:102462600-102464000	Enhancers	NHEK	skin
7	chr11:102463600-102463800	Enhancers	NHDF-Ad	bronchial
8	chr11:102463600-102464000	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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