Variant report

Variant	rs17099053
Chromosome Location	chr11:102486870-102486871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102485385..102487905-chr11:102489237..102492124,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17093627	1.00[AMR][1000 genomes]
rs17099014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17099170	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17174309	1.00[AMR][1000 genomes]
rs17174349	1.00[AMR][1000 genomes]
rs7342216	1.00[AMR][1000 genomes]
rs73582620	1.00[AMR][1000 genomes]
rs73584618	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102483800-102487000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr11:102484000-102487200	Enhancers	A549	lung
3	chr11:102484200-102488600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:102484200-102491200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:102484400-102488400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:102484600-102487000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:102485600-102487000	Enhancers	HUVEC	blood vessel
8	chr11:102485600-102490800	Weak transcription	Fetal Intestine Large	intestine
9	chr11:102485600-102492800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:102486200-102487000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:102486200-102487000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:102486200-102487000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:102486200-102487000	Enhancers	Lung	lung
14	chr11:102486200-102487000	Enhancers	HSMMtube	muscle
15	chr11:102486200-102487800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:102486200-102488600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:102486400-102487000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:102486400-102488200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:102486400-102488400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:102486400-102488600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:102486600-102487200	Enhancers	Hela-S3	cervix
22	chr11:102486600-102488200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:102486600-102488200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:102486600-102491600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:102486800-102487800	Enhancers	HepG2	liver
26	chr11:102486800-102488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:102486800-102488200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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