Variant report

Variant	rs17100417
Chromosome Location	chr12:64917819-64917820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64916693..64919673-chr12:64938897..64940557,2	K562	blood:
2	chr12:64908367..64910707-chr12:64917271..64919631,2	MCF-7	breast:
3	chr12:64916825..64919020-chr12:64921369..64923962,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs60436802	1.00[AMR][1000 genomes]
rs7299226	1.00[AMR][1000 genomes]
rs73315519	1.00[AMR][1000 genomes]
rs73315542	1.00[AMR][1000 genomes]
rs73315546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315562	1.00[AMR][1000 genomes]
rs73315571	1.00[AMR][1000 genomes]
rs73315574	1.00[AMR][1000 genomes]
rs73315582	1.00[AMR][1000 genomes]
rs73315585	1.00[AMR][1000 genomes]
rs73317511	1.00[AMR][1000 genomes]
rs73317515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64915000-64922400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:64915600-64918600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:64916600-64918000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:64916600-64925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:64916800-64918400	Weak transcription	HSMMtube	muscle
7	chr12:64916800-64918800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:64916800-64918800	Weak transcription	Fetal Brain Male	brain
9	chr12:64916800-64919000	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:64916800-64919200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:64916800-64919400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:64916800-64922400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:64916800-64925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr12:64916800-64925400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:64916800-64925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:64917000-64925600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr12:64917400-64920600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr12:64917400-64920600	Weak transcription	NHDF-Ad	bronchial
19	chr12:64917400-64922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:64917800-64919200	Weak transcription	HSMM	muscle
21	chr12:64917800-64921800	Weak transcription	Dnd41	blood

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