Variant report

Variant	rs73315582
Chromosome Location	chr12:64930185-64930186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17100417	1.00[AMR][1000 genomes]
rs60436802	1.00[AMR][1000 genomes]
rs7299226	1.00[AMR][1000 genomes]
rs73315519	1.00[AMR][1000 genomes]
rs73315542	1.00[AMR][1000 genomes]
rs73315546	1.00[AMR][1000 genomes]
rs73315562	1.00[AMR][1000 genomes]
rs73315571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317511	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64927400-64930400	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:64927800-64938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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