Variant report

Variant	rs7299226
Chromosome Location	chr12:64903226-64903227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17100417	1.00[AMR][1000 genomes]
rs60436802	1.00[AMR][1000 genomes]
rs73315519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315542	1.00[AMR][1000 genomes]
rs73315546	1.00[AMR][1000 genomes]
rs73315562	1.00[AMR][1000 genomes]
rs73315571	1.00[AMR][1000 genomes]
rs73315574	1.00[AMR][1000 genomes]
rs73315582	1.00[AMR][1000 genomes]
rs73315585	1.00[AMR][1000 genomes]
rs73317511	1.00[AMR][1000 genomes]
rs73317515	1.00[AMR][1000 genomes]
rs73323424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64871000-64908200	Weak transcription	Psoas Muscle	Psoas
2	chr12:64885400-64904400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:64888400-64904600	Weak transcription	Left Ventricle	heart
4	chr12:64889400-64903800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr12:64890600-64904600	Weak transcription	HSMMtube	muscle
6	chr12:64892000-64903800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:64893800-64904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:64894400-64903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:64895600-64903600	Weak transcription	GM12878-XiMat	blood
10	chr12:64895800-64903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:64895800-64912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:64896000-64904600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:64896200-64903600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr12:64896200-64905800	Weak transcription	Dnd41	blood
15	chr12:64896600-64916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:64901800-64904600	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:64902200-64906000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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