Variant report

Variant	rs60436802
Chromosome Location	chr12:64910722-64910723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17100417	1.00[AMR][1000 genomes]
rs7299226	1.00[AMR][1000 genomes]
rs73315519	1.00[AMR][1000 genomes]
rs73315542	1.00[AMR][1000 genomes]
rs73315546	1.00[AMR][1000 genomes]
rs73315562	1.00[AMR][1000 genomes]
rs73315571	1.00[AMR][1000 genomes]
rs73315574	1.00[AMR][1000 genomes]
rs73315582	1.00[AMR][1000 genomes]
rs73315585	1.00[AMR][1000 genomes]
rs73317511	1.00[AMR][1000 genomes]
rs73317515	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64895800-64912200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:64896600-64916000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:64905000-64916000	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:64908400-64912200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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