Variant report

Variant	rs17103122
Chromosome Location	chr1:79869753-79869754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFI44-2	chr1:79869657-79869841	XLOC_000266
2	lnc-IFI44-2	chr1:79869657-79869841	XLOC_000266
3	lnc-IFI44-2	chr1:79869657-79870246	XLOC_000266
4	lnc-IFI44-2	chr1:79869657-79869841	XLOC_000266
5	lnc-IFI44-2	chr1:79869656-79870246	NONHSAT004088

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11162698	1.00[EUR][1000 genomes]
rs11162708	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067404	1.00[EUR][1000 genomes]
rs12077125	1.00[CEU][hapmap]
rs12089887	1.00[EUR][1000 genomes]
rs12091688	1.00[EUR][1000 genomes]
rs12092037	1.00[EUR][1000 genomes]
rs12092854	1.00[EUR][1000 genomes]
rs12095310	1.00[EUR][1000 genomes]
rs13376313	1.00[EUR][1000 genomes]
rs17098650	0.90[EUR][1000 genomes]
rs17103225	0.90[EUR][1000 genomes]
rs17103302	0.86[EUR][1000 genomes]
rs17103311	0.86[EUR][1000 genomes]
rs28762700	0.86[EUR][1000 genomes]
rs3015007	0.90[EUR][1000 genomes]
rs3953575	0.90[EUR][1000 genomes]
rs57263150	1.00[EUR][1000 genomes]
rs58319353	1.00[EUR][1000 genomes]
rs58925724	1.00[EUR][1000 genomes]
rs58937668	0.86[EUR][1000 genomes]
rs6658868	1.00[EUR][1000 genomes]
rs6661647	1.00[EUR][1000 genomes]
rs6671529	1.00[EUR][1000 genomes]
rs6686663	1.00[EUR][1000 genomes]
rs6695364	0.86[EUR][1000 genomes]
rs72943031	1.00[ASN][1000 genomes]
rs72946533	1.00[EUR][1000 genomes]
rs7541121	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830337	chr1:79791879-79913241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv546633	chr1:79794719-79877035	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871649	chr1:79807447-79924175	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv462150	chr1:79835066-79873161	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv546634	chr1:79835066-79873161	Weak transcription Enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv462161	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv462173	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv470721	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv546635	chr1:79835066-79877035	Enhancers Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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