Variant report

Variant	rs58937668
Chromosome Location	chr1:79959902-79959903
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11162698	0.86[EUR][1000 genomes]
rs11162708	0.86[EUR][1000 genomes]
rs12067404	0.86[EUR][1000 genomes]
rs12089887	0.86[EUR][1000 genomes]
rs12091688	0.86[EUR][1000 genomes]
rs12092037	0.86[EUR][1000 genomes]
rs12092854	0.86[EUR][1000 genomes]
rs12095310	0.86[EUR][1000 genomes]
rs13376313	0.86[EUR][1000 genomes]
rs17098650	0.95[EUR][1000 genomes]
rs17103122	0.86[EUR][1000 genomes]
rs17103225	0.95[EUR][1000 genomes]
rs17103302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103311	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28762700	1.00[EUR][1000 genomes]
rs3015007	0.95[EUR][1000 genomes]
rs3953575	0.95[EUR][1000 genomes]
rs57263150	0.86[EUR][1000 genomes]
rs58319353	0.86[EUR][1000 genomes]
rs58925724	0.86[EUR][1000 genomes]
rs6658868	0.86[EUR][1000 genomes]
rs6661647	0.86[EUR][1000 genomes]
rs6671529	0.86[EUR][1000 genomes]
rs6686663	0.86[EUR][1000 genomes]
rs6695364	0.91[EUR][1000 genomes]
rs72946533	0.86[EUR][1000 genomes]
rs7541121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1012004	chr1:79945395-80096748	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv535017	chr1:79945395-80096748	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1012296	chr1:79945395-80300216	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1005022	chr1:79950774-80106902	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79951600-79960400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:79956200-79960000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:79956200-79960000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:79958200-79960000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:79958800-79960200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr1:79959200-79960000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:79959200-79960600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr1:79959600-79962200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:79959800-79961400	Weak transcription	H9 Cell Line	embryonic stem cell

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