Variant report

Variant	rs17103311
Chromosome Location	chr1:79973439-79973440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11162698	0.86[EUR][1000 genomes]
rs11162708	0.86[EUR][1000 genomes]
rs12067404	0.86[EUR][1000 genomes]
rs12089887	0.86[EUR][1000 genomes]
rs12091688	0.86[EUR][1000 genomes]
rs12092037	0.86[EUR][1000 genomes]
rs12092854	0.86[EUR][1000 genomes]
rs12095310	0.86[EUR][1000 genomes]
rs13376313	0.86[EUR][1000 genomes]
rs17098650	0.95[EUR][1000 genomes]
rs17103122	0.86[EUR][1000 genomes]
rs17103225	0.95[EUR][1000 genomes]
rs17103302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28762700	1.00[EUR][1000 genomes]
rs3015007	0.95[EUR][1000 genomes]
rs3953575	0.95[EUR][1000 genomes]
rs57263150	0.86[EUR][1000 genomes]
rs58319353	0.86[EUR][1000 genomes]
rs58925724	0.86[EUR][1000 genomes]
rs58937668	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6658868	0.86[EUR][1000 genomes]
rs6661647	0.86[EUR][1000 genomes]
rs6671529	0.86[EUR][1000 genomes]
rs6686663	0.86[EUR][1000 genomes]
rs6695364	0.91[EUR][1000 genomes]
rs72946533	0.86[EUR][1000 genomes]
rs7541121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1012004	chr1:79945395-80096748	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv535017	chr1:79945395-80096748	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1012296	chr1:79945395-80300216	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1005022	chr1:79950774-80106902	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv546636	chr1:79964823-80079996	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79973200-79974000	Enhancers	Primary T cells from cord blood	blood
2	chr1:79973200-79974400	Enhancers	Liver	Liver

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