Variant report

Variant	rs3015007
Chromosome Location	chr1:79926485-79926486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11162698	0.90[EUR][1000 genomes]
rs11162708	0.90[EUR][1000 genomes]
rs12067404	0.90[EUR][1000 genomes]
rs12089887	0.90[EUR][1000 genomes]
rs12091688	0.90[EUR][1000 genomes]
rs12092037	0.90[EUR][1000 genomes]
rs12092854	0.90[EUR][1000 genomes]
rs12095310	0.90[EUR][1000 genomes]
rs13376313	0.90[EUR][1000 genomes]
rs17098650	1.00[EUR][1000 genomes]
rs17103122	0.90[EUR][1000 genomes]
rs17103225	1.00[EUR][1000 genomes]
rs17103302	0.95[EUR][1000 genomes]
rs17103311	0.95[EUR][1000 genomes]
rs28762700	0.95[EUR][1000 genomes]
rs3953575	1.00[EUR][1000 genomes]
rs57263150	0.90[EUR][1000 genomes]
rs58319353	0.90[EUR][1000 genomes]
rs58925724	0.90[EUR][1000 genomes]
rs58937668	0.95[EUR][1000 genomes]
rs6658868	0.90[EUR][1000 genomes]
rs6661647	0.90[EUR][1000 genomes]
rs6671529	0.90[EUR][1000 genomes]
rs6686663	0.90[EUR][1000 genomes]
rs6695364	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72946533	0.90[EUR][1000 genomes]
rs7541121	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79922800-79927200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:79924400-79927400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:79926200-79927600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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