Variant report

Variant	rs17103626
Chromosome Location	chr5:145079408-145079409
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036303	0.93[ASN][1000 genomes]
rs10040900	0.93[ASN][1000 genomes]
rs10041019	0.93[ASN][1000 genomes]
rs10043918	0.93[ASN][1000 genomes]
rs10046079	0.93[ASN][1000 genomes]
rs10059454	0.93[ASN][1000 genomes]
rs10061046	0.93[ASN][1000 genomes]
rs10063177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064838	0.93[ASN][1000 genomes]
rs10072272	0.93[ASN][1000 genomes]
rs11951086	0.93[ASN][1000 genomes]
rs13355336	0.93[ASN][1000 genomes]
rs13356922	0.93[ASN][1000 genomes]
rs13360440	0.93[ASN][1000 genomes]
rs1363554	0.93[ASN][1000 genomes]
rs1835976	0.93[ASN][1000 genomes]
rs28377159	0.93[ASN][1000 genomes]
rs28490156	0.93[ASN][1000 genomes]
rs28584959	0.93[ASN][1000 genomes]
rs28604887	0.93[ASN][1000 genomes]
rs28715852	0.93[ASN][1000 genomes]
rs28794180	0.93[ASN][1000 genomes]
rs28814957	0.93[ASN][1000 genomes]
rs338887	1.00[JPT][hapmap]
rs338896	1.00[JPT][hapmap]
rs57049514	0.93[ASN][1000 genomes]
rs58980830	0.93[ASN][1000 genomes]
rs61316690	0.93[ASN][1000 genomes]
rs62392711	0.93[ASN][1000 genomes]
rs62392716	0.93[ASN][1000 genomes]
rs62394189	0.93[ASN][1000 genomes]
rs62394214	0.93[ASN][1000 genomes]
rs62395867	0.93[ASN][1000 genomes]
rs6874465	0.93[ASN][1000 genomes]
rs6884965	0.93[ASN][1000 genomes]
rs73311508	0.93[ASN][1000 genomes]
rs919729	0.94[ASN][1000 genomes]
rs9324989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968717	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145089600	Weak transcription	Gastric	stomach
2	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:145075400-145090200	Weak transcription	Aorta	Aorta
5	chr5:145076600-145088200	Weak transcription	Right Ventricle	heart
6	chr5:145077000-145091000	Weak transcription	Pancreas	Pancrea
7	chr5:145079000-145079800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:145079400-145079800	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links