Variant report

Variant	rs62392716
Chromosome Location	chr5:144954066-144954067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10036303	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040900	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043918	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046079	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059454	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061046	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064838	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10072272	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477282	0.83[EUR][1000 genomes]
rs11951086	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355336	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356922	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360440	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103626	0.93[ASN][1000 genomes]
rs1835976	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28377159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490156	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536780	1.00[EUR][1000 genomes]
rs28584959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604887	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28794180	1.00[ASN][1000 genomes]
rs28814957	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57049514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58980830	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61316690	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392264	0.95[EUR][1000 genomes]
rs62392265	1.00[EUR][1000 genomes]
rs62392285	0.89[EUR][1000 genomes]
rs62392706	0.95[EUR][1000 genomes]
rs62392709	1.00[EUR][1000 genomes]
rs62392711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394187	1.00[EUR][1000 genomes]
rs62394189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394212	1.00[EUR][1000 genomes]
rs62394214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394218	1.00[EUR][1000 genomes]
rs62394220	1.00[EUR][1000 genomes]
rs62394221	1.00[EUR][1000 genomes]
rs62394223	1.00[EUR][1000 genomes]
rs62395867	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874465	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884965	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311508	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919729	0.87[ASN][1000 genomes]
rs9968717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144952600-144956400	Weak transcription	Psoas Muscle	Psoas
2	chr5:144953200-144957200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links