Variant report

Variant	rs58980830
Chromosome Location	chr5:144967112-144967113
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10036303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040900	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041019	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043918	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064838	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069261	0.95[EUR][1000 genomes]
rs10072272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355336	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363554	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103626	0.93[ASN][1000 genomes]
rs1835976	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28377159	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490156	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536780	0.95[EUR][1000 genomes]
rs28584959	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28604887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28715852	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28794180	1.00[ASN][1000 genomes]
rs28814957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57049514	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61316690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392264	0.89[EUR][1000 genomes]
rs62392265	0.95[EUR][1000 genomes]
rs62392285	0.84[EUR][1000 genomes]
rs62392706	0.89[EUR][1000 genomes]
rs62392709	0.95[EUR][1000 genomes]
rs62392711	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62392716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394187	0.95[EUR][1000 genomes]
rs62394189	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394212	0.95[EUR][1000 genomes]
rs62394214	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394218	0.95[EUR][1000 genomes]
rs62394220	0.95[EUR][1000 genomes]
rs62394221	0.95[EUR][1000 genomes]
rs62394223	0.95[EUR][1000 genomes]
rs62395867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874465	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884965	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311508	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919729	0.87[ASN][1000 genomes]
rs9968717	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:144964200-144967400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:144965200-144967600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:144965200-144967600	Enhancers	Duodenum Mucosa	Duodenum
4	chr5:144965200-144968000	Enhancers	Fetal Intestine Large	intestine
5	chr5:144965200-144968000	Enhancers	Fetal Intestine Small	intestine
6	chr5:144965600-144967400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:144965800-144967600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:144966400-144968400	Enhancers	Osteobl	bone
9	chr5:144966600-144967400	Enhancers	Hela-S3	cervix
10	chr5:144966600-144968000	Enhancers	NH-A	brain
11	chr5:144966600-144968400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:144966600-144968400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr5:144966600-144968400	Enhancers	NHDF-Ad	bronchial
14	chr5:144966800-144968000	Enhancers	NHLF	lung
15	chr5:144966800-144968400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:144966800-144968400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:144967000-144967600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:144967000-144967600	Flanking Active TSS	A549	lung
19	chr5:144967000-144967600	Enhancers	HUVEC	blood vessel
20	chr5:144967000-144968000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:144967000-144968000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:144967000-144968000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:144967000-144968000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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