Variant report
| Variant | rs28794180 |
|---|---|
| Chromosome Location | chr5:145031448-145031449 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10036303 | 1.00[ASN][1000 genomes] |
| rs10040900 | 1.00[ASN][1000 genomes] |
| rs10041019 | 1.00[ASN][1000 genomes] |
| rs10043918 | 1.00[ASN][1000 genomes] |
| rs10046079 | 1.00[ASN][1000 genomes] |
| rs10052746 | 0.84[EUR][1000 genomes] |
| rs10055564 | 0.89[EUR][1000 genomes] |
| rs10059454 | 1.00[ASN][1000 genomes] |
| rs10061046 | 1.00[ASN][1000 genomes] |
| rs10064838 | 1.00[ASN][1000 genomes] |
| rs10065861 | 0.89[EUR][1000 genomes] |
| rs10072272 | 1.00[ASN][1000 genomes] |
| rs11951086 | 1.00[ASN][1000 genomes] |
| rs13355336 | 1.00[ASN][1000 genomes] |
| rs13356922 | 1.00[ASN][1000 genomes] |
| rs13360440 | 1.00[ASN][1000 genomes] |
| rs1363554 | 1.00[ASN][1000 genomes] |
| rs17103626 | 0.93[ASN][1000 genomes] |
| rs1835976 | 1.00[ASN][1000 genomes] |
| rs28368285 | 0.95[EUR][1000 genomes] |
| rs28377159 | 1.00[ASN][1000 genomes] |
| rs28490156 | 1.00[ASN][1000 genomes] |
| rs28584959 | 1.00[ASN][1000 genomes] |
| rs28604887 | 1.00[ASN][1000 genomes] |
| rs28715852 | 1.00[ASN][1000 genomes] |
| rs28814957 | 1.00[ASN][1000 genomes] |
| rs57049514 | 1.00[ASN][1000 genomes] |
| rs58980830 | 1.00[ASN][1000 genomes] |
| rs61316690 | 1.00[ASN][1000 genomes] |
| rs62392296 | 0.84[EUR][1000 genomes] |
| rs62392297 | 0.89[EUR][1000 genomes] |
| rs62392299 | 0.84[EUR][1000 genomes] |
| rs62392300 | 0.89[EUR][1000 genomes] |
| rs62392711 | 1.00[ASN][1000 genomes] |
| rs62392716 | 1.00[ASN][1000 genomes] |
| rs62394189 | 1.00[ASN][1000 genomes] |
| rs62394214 | 1.00[ASN][1000 genomes] |
| rs62395867 | 1.00[ASN][1000 genomes] |
| rs6874465 | 1.00[ASN][1000 genomes] |
| rs6884965 | 1.00[ASN][1000 genomes] |
| rs73311508 | 1.00[ASN][1000 genomes] |
| rs919729 | 0.87[ASN][1000 genomes] |
| rs9968717 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883004 | chr5:144945649-145068001 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv883005 | chr5:144945649-145107586 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv275206 | chr5:145016621-145036932 | Enhancers Strong transcription Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:145026800-145041000 | Weak transcription | Ovary | ovary |
| 2 | chr5:145028400-145060400 | Weak transcription | Pancreas | Pancrea |
