Variant report

Variant	rs62392296
Chromosome Location	chr5:145040932-145040933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10052746	0.89[EUR][1000 genomes]
rs10055564	0.94[EUR][1000 genomes]
rs10065861	0.94[EUR][1000 genomes]
rs10477282	0.82[EUR][1000 genomes]
rs13362312	0.88[EUR][1000 genomes]
rs28368285	0.89[EUR][1000 genomes]
rs28794180	0.84[EUR][1000 genomes]
rs62392285	0.88[EUR][1000 genomes]
rs62392297	0.94[EUR][1000 genomes]
rs62392299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62392300	0.94[EUR][1000 genomes]
rs62392302	0.88[EUR][1000 genomes]
rs62392709	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
3	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:145037000-145041200	Weak transcription	Aorta	Aorta
6	chr5:145039000-145042200	Enhancers	Fetal Brain Female	brain
7	chr5:145039600-145042000	Enhancers	Fetal Brain Male	brain
8	chr5:145039600-145042400	Enhancers	Fetal Lung	lung
9	chr5:145039800-145042400	Enhancers	Fetal Stomach	stomach
10	chr5:145040000-145042200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:145040400-145042200	Enhancers	Stomach Smooth Muscle	stomach
12	chr5:145040600-145042000	Enhancers	Colon Smooth Muscle	Colon
13	chr5:145040800-145042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:145040800-145042400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links