Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10039939	0.88[AFR][1000 genomes]
rs10040035	0.88[AFR][1000 genomes]
rs10043087	0.91[AFR][1000 genomes]
rs10052746	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10055564	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056757	0.88[AFR][1000 genomes]
rs10062578	0.91[AFR][1000 genomes]
rs10066359	0.88[AFR][1000 genomes]
rs10072356	0.91[AFR][1000 genomes]
rs10076979	0.88[AFR][1000 genomes]
rs10477281	0.87[AFR][1000 genomes]
rs10477282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10477283	0.94[AFR][1000 genomes]
rs10515555	0.88[AFR][1000 genomes]
rs10515556	0.87[AFR][1000 genomes]
rs13362312	0.82[EUR][1000 genomes]
rs13436854	0.94[AFR][1000 genomes]
rs1347158	0.88[AFR][1000 genomes]
rs28368285	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28599550	0.88[AFR][1000 genomes]
rs28794180	0.89[EUR][1000 genomes]
rs28889604	0.96[AFR][1000 genomes]
rs62392285	0.82[EUR][1000 genomes]
rs62392296	0.94[EUR][1000 genomes]
rs62392297	0.88[EUR][1000 genomes]
rs62392299	0.94[EUR][1000 genomes]
rs62392300	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62392302	0.82[EUR][1000 genomes]
rs713327	0.88[AFR][1000 genomes]
rs9324987	0.91[AFR][1000 genomes]
rs951551	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026800-145041000	Weak transcription	Ovary	ovary
2	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
3	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum

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