Variant report
| Variant | rs10055564 |
|---|---|
| Chromosome Location | chr5:145031743-145031744 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10039939 | 0.93[AFR][1000 genomes] |
| rs10040035 | 0.93[AFR][1000 genomes] |
| rs10043087 | 0.96[AFR][1000 genomes] |
| rs10052746 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10056757 | 0.93[AFR][1000 genomes] |
| rs10062578 | 0.89[AFR][1000 genomes] |
| rs10065861 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10066359 | 0.93[AFR][1000 genomes] |
| rs10072356 | 0.96[AFR][1000 genomes] |
| rs10076979 | 0.93[AFR][1000 genomes] |
| rs10477281 | 0.85[AFR][1000 genomes] |
| rs10477282 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10477283 | 0.91[AFR][1000 genomes] |
| rs10515555 | 0.93[AFR][1000 genomes] |
| rs10515556 | 0.92[AFR][1000 genomes] |
| rs13362312 | 0.82[EUR][1000 genomes] |
| rs13436854 | 0.91[AFR][1000 genomes] |
| rs1347158 | 0.93[AFR][1000 genomes] |
| rs28368285 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28599550 | 0.93[AFR][1000 genomes] |
| rs28794180 | 0.89[EUR][1000 genomes] |
| rs28889604 | 0.93[AFR][1000 genomes] |
| rs62392285 | 0.82[EUR][1000 genomes] |
| rs62392296 | 0.94[EUR][1000 genomes] |
| rs62392297 | 0.88[EUR][1000 genomes] |
| rs62392299 | 0.94[EUR][1000 genomes] |
| rs62392300 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62392302 | 0.82[EUR][1000 genomes] |
| rs713327 | 0.93[AFR][1000 genomes] |
| rs9324987 | 0.96[AFR][1000 genomes] |
| rs951551 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883004 | chr5:144945649-145068001 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv883005 | chr5:144945649-145107586 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv275206 | chr5:145016621-145036932 | Enhancers Strong transcription Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:145026800-145041000 | Weak transcription | Ovary | ovary |
| 2 | chr5:145028400-145060400 | Weak transcription | Pancreas | Pancrea |
