Variant report

Variant	rs62392300
Chromosome Location	chr5:145056550-145056551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10052746	0.94[EUR][1000 genomes]
rs10055564	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10477282	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13362312	0.82[EUR][1000 genomes]
rs28368285	0.94[EUR][1000 genomes]
rs28794180	0.89[EUR][1000 genomes]
rs62392285	0.82[EUR][1000 genomes]
rs62392296	0.94[EUR][1000 genomes]
rs62392297	0.88[EUR][1000 genomes]
rs62392299	0.94[EUR][1000 genomes]
rs62392302	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145053200-145060400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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