Variant report

Variant	rs62392299
Chromosome Location	chr5:145050391-145050392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10052746	0.89[EUR][1000 genomes]
rs10055564	0.94[EUR][1000 genomes]
rs10065861	0.94[EUR][1000 genomes]
rs10477282	0.82[EUR][1000 genomes]
rs13362312	0.88[EUR][1000 genomes]
rs28368285	0.89[EUR][1000 genomes]
rs28794180	0.84[EUR][1000 genomes]
rs62392285	0.88[EUR][1000 genomes]
rs62392296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62392297	0.94[EUR][1000 genomes]
rs62392300	0.94[EUR][1000 genomes]
rs62392302	0.88[EUR][1000 genomes]
rs62392709	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145042400-145053200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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