Variant report

Variant	rs62392297
Chromosome Location	chr5:145042181-145042182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10052746	0.83[EUR][1000 genomes]
rs10055564	0.88[EUR][1000 genomes]
rs10065861	0.88[EUR][1000 genomes]
rs13362312	0.82[EUR][1000 genomes]
rs2116818	0.97[AFR][1000 genomes]
rs28368285	0.83[EUR][1000 genomes]
rs28794180	0.89[EUR][1000 genomes]
rs62392285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62392296	0.94[EUR][1000 genomes]
rs62392299	0.94[EUR][1000 genomes]
rs62392300	0.88[EUR][1000 genomes]
rs62392302	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:145039000-145042200	Enhancers	Fetal Brain Female	brain
5	chr5:145039600-145042400	Enhancers	Fetal Lung	lung
6	chr5:145039800-145042400	Enhancers	Fetal Stomach	stomach
7	chr5:145040000-145042200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:145040400-145042200	Enhancers	Stomach Smooth Muscle	stomach
9	chr5:145040800-145042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:145040800-145042400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:145041600-145042200	Enhancers	Rectal Smooth Muscle	rectum
12	chr5:145042000-145044200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:145042000-145045800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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