Variant report

Variant	rs62392285
Chromosome Location	chr5:145027001-145027002
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10036303	0.84[EUR][1000 genomes]
rs10040900	0.84[EUR][1000 genomes]
rs10041019	0.84[EUR][1000 genomes]
rs10043918	0.84[EUR][1000 genomes]
rs10046079	0.84[EUR][1000 genomes]
rs10055564	0.82[EUR][1000 genomes]
rs10059454	0.84[EUR][1000 genomes]
rs10061046	0.84[EUR][1000 genomes]
rs10064838	0.84[EUR][1000 genomes]
rs10065861	0.82[EUR][1000 genomes]
rs10069261	0.89[EUR][1000 genomes]
rs10072272	0.84[EUR][1000 genomes]
rs10477282	0.94[EUR][1000 genomes]
rs11951086	0.84[EUR][1000 genomes]
rs13355336	0.84[EUR][1000 genomes]
rs13356922	0.84[EUR][1000 genomes]
rs13360440	0.84[EUR][1000 genomes]
rs1363554	0.89[EUR][1000 genomes]
rs1835976	0.84[EUR][1000 genomes]
rs2116818	0.97[AFR][1000 genomes]
rs28377159	0.89[EUR][1000 genomes]
rs28490156	0.89[EUR][1000 genomes]
rs28536780	0.89[EUR][1000 genomes]
rs28584959	0.89[EUR][1000 genomes]
rs28604887	0.84[EUR][1000 genomes]
rs28715852	0.89[EUR][1000 genomes]
rs28814957	0.84[EUR][1000 genomes]
rs57049514	0.89[EUR][1000 genomes]
rs58980830	0.84[EUR][1000 genomes]
rs61316690	0.84[EUR][1000 genomes]
rs62392264	0.84[EUR][1000 genomes]
rs62392265	0.89[EUR][1000 genomes]
rs62392296	0.88[EUR][1000 genomes]
rs62392297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62392299	0.88[EUR][1000 genomes]
rs62392300	0.82[EUR][1000 genomes]
rs62392706	0.84[EUR][1000 genomes]
rs62392709	0.89[EUR][1000 genomes]
rs62392711	0.89[EUR][1000 genomes]
rs62392716	0.89[EUR][1000 genomes]
rs62394187	0.89[EUR][1000 genomes]
rs62394189	0.89[EUR][1000 genomes]
rs62394212	0.89[EUR][1000 genomes]
rs62394214	0.89[EUR][1000 genomes]
rs62394218	0.89[EUR][1000 genomes]
rs62394220	0.89[EUR][1000 genomes]
rs62394221	0.89[EUR][1000 genomes]
rs62394223	0.89[EUR][1000 genomes]
rs62395867	0.84[EUR][1000 genomes]
rs6874465	0.84[EUR][1000 genomes]
rs6884965	0.84[EUR][1000 genomes]
rs73311508	0.84[EUR][1000 genomes]
rs9968717	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275206	chr5:145016621-145036932	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145026400-145027200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:145026400-145027400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:145026400-145027600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:145026400-145027600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:145026400-145027600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:145026600-145027400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:145026600-145027600	Strong transcription	Fetal Intestine Small	intestine
8	chr5:145026600-145027800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:145026800-145027400	Enhancers	Osteobl	bone
10	chr5:145026800-145041000	Weak transcription	Ovary	ovary
11	chr5:145027000-145027400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:145027000-145027600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:145027000-145027600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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