Variant report

Variant	rs17105878
Chromosome Location	chr14:37462715-37462716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10134773	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs10136927	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10150136	0.89[AMR][1000 genomes]
rs17105857	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28384080	0.81[AFR][1000 genomes]
rs28420078	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28583769	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28647542	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28826271	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17105878	PARD3	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37446200-37465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37458000-37466000	Weak transcription	HSMM	muscle
3	chr14:37459400-37463200	Weak transcription	Fetal Heart	heart
4	chr14:37459400-37465600	Weak transcription	NHDF-Ad	bronchial
5	chr14:37462400-37465800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:37462600-37465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:37462600-37465400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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