Variant report

Variant	rs28420078
Chromosome Location	chr14:37464472-37464473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10134773	0.87[AFR][1000 genomes]
rs10136927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105857	0.89[AMR][1000 genomes]
rs17105878	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28384080	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28583769	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28826271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37446200-37465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37458000-37466000	Weak transcription	HSMM	muscle
3	chr14:37459400-37465600	Weak transcription	NHDF-Ad	bronchial
4	chr14:37462400-37465800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:37462600-37465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:37462600-37465400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:37462800-37465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:37463600-37465000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:37463600-37465400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:37464200-37465000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:37464400-37464800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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