Variant report

Variant	rs28647542
Chromosome Location	chr14:37457690-37457691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10134773	0.87[AFR][1000 genomes]
rs10136927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150136	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105857	0.89[AMR][1000 genomes]
rs17105878	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28384080	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28420078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28583769	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28826271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37446200-37465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37452200-37457800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:37452600-37457800	Weak transcription	HMEC	breast
4	chr14:37452600-37457800	Weak transcription	NHEK	skin
5	chr14:37455400-37459400	Enhancers	Fetal Heart	heart
6	chr14:37457200-37458600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:37457200-37458600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:37457200-37458600	Enhancers	NHLF	lung
9	chr14:37457200-37459400	Enhancers	NHDF-Ad	bronchial
10	chr14:37457400-37458200	Weak transcription	Left Ventricle	heart
11	chr14:37457600-37458200	Enhancers	Osteobl	bone
12	chr14:37457600-37458400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:37457600-37458800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:37457600-37459000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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