Variant report

Variant	rs17106429
Chromosome Location	chr14:69335397-69335398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACTN1-1	chr14:69335372-69335668	NONHSAT037497

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10130940	0.85[JPT][hapmap]
rs10136833	0.85[JPT][hapmap]
rs10139706	0.85[JPT][hapmap]
rs10142141	0.85[JPT][hapmap]
rs10147437	0.85[JPT][hapmap]
rs10147838	0.85[JPT][hapmap]
rs10149281	0.85[JPT][hapmap]
rs10151706	0.85[JPT][hapmap]
rs12101054	1.00[JPT][hapmap]
rs12434957	0.85[JPT][hapmap]
rs1274949	0.86[ASN][1000 genomes]
rs1475034	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1742501	0.83[ASN][1000 genomes]
rs181475	0.87[ASN][1000 genomes]
rs194718	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2093009	0.87[ASN][1000 genomes]
rs2093010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2273419	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs370535	1.00[ASN][1000 genomes]
rs372177	0.86[ASN][1000 genomes]
rs372522	0.83[ASN][1000 genomes]
rs372896	0.86[ASN][1000 genomes]
rs397282	0.86[ASN][1000 genomes]
rs41285482	0.97[ASN][1000 genomes]
rs7145390	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs743127	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv85448	chr14:69332829-69335669	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69310800-69336400	Weak transcription	NHLF	lung
2	chr14:69310800-69339800	Weak transcription	Right Ventricle	heart
3	chr14:69321200-69338000	Weak transcription	Gastric	stomach
4	chr14:69322400-69336600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:69323800-69337800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:69324800-69338600	Weak transcription	HepG2	liver
7	chr14:69328200-69336600	Weak transcription	HMEC	breast
8	chr14:69328800-69336200	Weak transcription	HSMM	muscle
9	chr14:69329600-69338200	Weak transcription	Pancreas	Pancrea
10	chr14:69330000-69338400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:69330000-69351000	Weak transcription	Fetal Heart	heart
12	chr14:69330200-69338000	Weak transcription	Hela-S3	cervix
13	chr14:69330200-69338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69330200-69348200	Weak transcription	K562	blood
15	chr14:69331200-69338200	Weak transcription	Colonic Mucosa	Colon
16	chr14:69331200-69350800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:69331400-69344600	Weak transcription	Brain Angular Gyrus	brain
18	chr14:69332600-69336600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:69332600-69337400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:69332800-69335800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:69332800-69336200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:69332800-69336200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:69332800-69336400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:69332800-69336400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:69332800-69336400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:69332800-69336400	Weak transcription	HSMMtube	muscle
27	chr14:69332800-69336400	Weak transcription	Osteobl	bone
28	chr14:69332800-69336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69332800-69336800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69332800-69337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:69332800-69337600	Weak transcription	Fetal Intestine Small	intestine
32	chr14:69332800-69337600	Weak transcription	Fetal Stomach	stomach
33	chr14:69332800-69337800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:69332800-69337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:69332800-69337800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:69332800-69337800	Weak transcription	A549	lung
37	chr14:69332800-69338000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:69332800-69338000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:69332800-69338000	Weak transcription	Liver	Liver
40	chr14:69332800-69338000	Weak transcription	HUVEC	blood vessel
41	chr14:69332800-69338000	Weak transcription	NHEK	skin
42	chr14:69332800-69338200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:69332800-69338200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:69332800-69338200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr14:69332800-69338200	Weak transcription	Esophagus	oesophagus
46	chr14:69332800-69338600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:69333000-69336400	Weak transcription	Primary T cells from cord blood	blood
48	chr14:69333000-69338200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:69333000-69338400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:69333200-69337400	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links