Variant report

Variant	rs17106432
Chromosome Location	chr10:92968949-92968950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92921955..92923969-chr10:92967629..92969644,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509623	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186502	1.00[ASN][1000 genomes]
rs12257267	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[ASN][1000 genomes]
rs12780689	1.00[ASN][1000 genomes]
rs17106376	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106435	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[ASN][1000 genomes]
rs66727333	1.00[ASN][1000 genomes]
rs68172749	1.00[ASN][1000 genomes]
rs72815471	1.00[ASN][1000 genomes]
rs73310426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908053	1.00[ASN][1000 genomes]
rs7921841	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3344067	chr10:92968522-92970520	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2568346	chr10:92968725-92970361	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92959200-92979200	Weak transcription	NHLF	lung
2	chr10:92959400-92979800	Weak transcription	Esophagus	oesophagus
3	chr10:92960000-92970600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:92961200-92971400	Weak transcription	Lung	lung
5	chr10:92962200-92970400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:92963000-92971200	Weak transcription	K562	blood
7	chr10:92964600-92970400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:92964600-92973800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:92966000-92969200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:92966600-92969800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:92966600-92969800	Weak transcription	Gastric	stomach
12	chr10:92966600-92970000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:92966600-92971400	Weak transcription	Right Atrium	heart
14	chr10:92966600-92980000	Weak transcription	Ovary	ovary
15	chr10:92966800-92969600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:92966800-92969600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:92966800-92969800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:92966800-92969800	Weak transcription	Fetal Intestine Small	intestine
19	chr10:92966800-92969800	Weak transcription	Fetal Thymus	thymus
20	chr10:92966800-92969800	Weak transcription	Left Ventricle	heart
21	chr10:92966800-92969800	Weak transcription	Psoas Muscle	Psoas
22	chr10:92966800-92970000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:92966800-92970000	Weak transcription	Fetal Heart	heart
24	chr10:92966800-92971200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:92967000-92970200	Weak transcription	Thymus	Thymus
26	chr10:92967200-92978800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:92967400-92969600	Weak transcription	Primary T cells from cord blood	blood
28	chr10:92967600-92969200	Enhancers	HepG2	liver
29	chr10:92967800-92971600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr10:92968000-92970800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:92968000-92971800	Enhancers	Primary B cells from peripheral blood	blood
32	chr10:92968200-92969000	Enhancers	Dnd41	blood
33	chr10:92968200-92969200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr10:92968200-92969200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:92968200-92970600	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:92968200-92972600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:92968400-92969000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr10:92968400-92969800	Weak transcription	Right Ventricle	heart
39	chr10:92968400-92970000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:92968400-92970200	Weak transcription	Brain Substantia Nigra	brain
41	chr10:92968400-92979600	Weak transcription	Brain Anterior Caudate	brain
42	chr10:92968600-92969600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr10:92968600-92969800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:92968600-92970000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:92968600-92970200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr10:92968600-92970200	Weak transcription	Pancreas	Pancrea
47	chr10:92968600-92970600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:92968600-92971800	Enhancers	Primary B cells from cord blood	blood
49	chr10:92968600-92975200	Weak transcription	Small Intestine	intestine
50	chr10:92968600-92975400	Weak transcription	Fetal Intestine Large	intestine

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