Variant report

Variant	rs17106435
Chromosome Location	chr10:92971535-92971536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92969491..92972422-chr10:92980099..92981687,2	K562	blood:

Variant related genes	Relation type
ENSG00000180628	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10509623	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186502	1.00[ASN][1000 genomes]
rs12257267	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774904	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12780689	1.00[ASN][1000 genomes]
rs17106376	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106432	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35848051	1.00[ASN][1000 genomes]
rs66727333	1.00[ASN][1000 genomes]
rs68172749	1.00[ASN][1000 genomes]
rs72815471	1.00[ASN][1000 genomes]
rs73310426	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908053	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs7921841	1.00[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92959200-92979200	Weak transcription	NHLF	lung
2	chr10:92959400-92979800	Weak transcription	Esophagus	oesophagus
3	chr10:92964600-92973800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:92966600-92980000	Weak transcription	Ovary	ovary
5	chr10:92967200-92978800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:92967800-92971600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:92968000-92971800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:92968200-92972600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:92968400-92979600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:92968600-92971800	Enhancers	Primary B cells from cord blood	blood
11	chr10:92968600-92975200	Weak transcription	Small Intestine	intestine
12	chr10:92968600-92975400	Weak transcription	Fetal Intestine Large	intestine
13	chr10:92968800-92971800	Enhancers	GM12878-XiMat	blood
14	chr10:92969600-92971600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:92969600-92971800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:92969800-92971800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:92970000-92971600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:92970000-92971600	Enhancers	Fetal Heart	heart
19	chr10:92970000-92971800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:92970200-92972200	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:92970200-92972200	Enhancers	Brain Substantia Nigra	brain
22	chr10:92970400-92971600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:92970400-92971800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:92970400-92975800	Weak transcription	Fetal Intestine Small	intestine
25	chr10:92970400-92979800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:92970400-92979800	Weak transcription	Psoas Muscle	Psoas
27	chr10:92970600-92971800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:92970600-92971800	Enhancers	Brain Hippocampus Middle	brain
29	chr10:92970600-92972000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:92970600-92975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:92970600-92975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:92970600-92978800	Weak transcription	Dnd41	blood
33	chr10:92970600-92979200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:92970600-92979600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:92970600-92979800	Weak transcription	Thymus	Thymus
36	chr10:92970800-92975200	Weak transcription	HepG2	liver
37	chr10:92970800-92979600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:92971000-92971600	Enhancers	Colon Smooth Muscle	Colon
39	chr10:92971000-92971800	Enhancers	Left Ventricle	heart
40	chr10:92971000-92972000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:92971200-92971600	Weak transcription	Aorta	Aorta
42	chr10:92971200-92971800	Enhancers	K562	blood
43	chr10:92971200-92972200	Enhancers	Brain Angular Gyrus	brain
44	chr10:92971200-92975800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:92971200-92979000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:92971400-92971800	Enhancers	Lung	lung
47	chr10:92971400-92971800	Enhancers	Right Atrium	heart
48	chr10:92971400-92971800	Enhancers	Right Ventricle	heart

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