Variant report

Variant	rs7908053
Chromosome Location	chr10:92934593-92934594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92927463..92929607-chr10:92933757..92936715,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509623	1.00[ASN][1000 genomes]
rs11186502	1.00[ASN][1000 genomes]
rs12218424	0.85[ASW][hapmap]
rs12257267	1.00[ASN][1000 genomes]
rs12774904	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12780689	1.00[ASN][1000 genomes]
rs17106376	0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106432	1.00[ASN][1000 genomes]
rs17106435	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs35848051	1.00[ASN][1000 genomes]
rs66727333	1.00[ASN][1000 genomes]
rs68172749	1.00[ASN][1000 genomes]
rs7092364	1.00[CHD][hapmap]
rs72815471	1.00[ASN][1000 genomes]
rs73310426	1.00[ASN][1000 genomes]
rs7921841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7908053	BCAT1	trans	lymphoblastoid	seeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92924200-92937200	Weak transcription	Primary B cells from cord blood	blood
2	chr10:92924600-92934800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr10:92924600-92937200	Weak transcription	Fetal Thymus	thymus
4	chr10:92924800-92944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:92924800-92944600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:92924800-92944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:92924800-92945200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:92925400-92934600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:92925400-92944200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:92926000-92943800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:92926400-92938600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:92926600-92944600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:92926800-92945200	Weak transcription	Fetal Heart	heart
14	chr10:92928000-92934600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:92928400-92944600	Weak transcription	Spleen	Spleen
16	chr10:92930000-92937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:92931400-92934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:92931400-92934600	Weak transcription	Dnd41	blood
19	chr10:92931600-92935400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:92931600-92944600	Weak transcription	Psoas Muscle	Psoas
21	chr10:92932200-92957800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:92932600-92934800	Weak transcription	Aorta	Aorta
23	chr10:92932600-92944600	Weak transcription	Right Ventricle	heart
24	chr10:92932800-92944600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:92933200-92941200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:92933400-92935200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:92933800-92940800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:92934000-92934600	Weak transcription	Primary T cells from cord blood	blood

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