Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17107009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17107011	0.97[ASN][1000 genomes]
rs28542174	1.00[AMR][1000 genomes]
rs28731105	1.00[AMR][1000 genomes]
rs59184512	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308584	1.00[AMR][1000 genomes]
rs73308593	1.00[AMR][1000 genomes]
rs73310308	1.00[AMR][1000 genomes]
rs73316330	1.00[AMR][1000 genomes]
rs73316332	1.00[AMR][1000 genomes]
rs73316335	1.00[AMR][1000 genomes]
rs73316341	1.00[AMR][1000 genomes]
rs73316342	1.00[AMR][1000 genomes]
rs73316345	1.00[AMR][1000 genomes]
rs73316348	1.00[AMR][1000 genomes]
rs73316357	1.00[AMR][1000 genomes]
rs73316362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316371	1.00[AMR][1000 genomes]
rs73316373	1.00[AMR][1000 genomes]
rs73316375	1.00[AMR][1000 genomes]
rs73316376	1.00[AMR][1000 genomes]
rs73322213	1.00[AMR][1000 genomes]
rs73322215	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902109	chr14:78603877-78634174	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv520241	chr14:78623134-78634174	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78624600-78635800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78630800-78636400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:78630800-78636800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:78631000-78635800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:78631000-78636400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:78631000-78636400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:78632400-78636800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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