Variant report
| Variant | rs73316345 |
|---|---|
| Chromosome Location | chr14:78624596-78624597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:78618637..78620285-chr14:78622605..78625562,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17107006 | 1.00[AMR][1000 genomes] |
| rs17107009 | 1.00[AMR][1000 genomes] |
| rs28542174 | 1.00[AMR][1000 genomes] |
| rs28731105 | 1.00[AMR][1000 genomes] |
| rs59184512 | 1.00[AMR][1000 genomes] |
| rs73308584 | 1.00[AMR][1000 genomes] |
| rs73308593 | 1.00[AMR][1000 genomes] |
| rs73310308 | 1.00[AMR][1000 genomes] |
| rs73316330 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316332 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316335 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316341 | 1.00[AMR][1000 genomes] |
| rs73316342 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316348 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316357 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316362 | 1.00[AMR][1000 genomes] |
| rs73316371 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316373 | 1.00[AMR][1000 genomes] |
| rs73316375 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73316376 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73322213 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73322215 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902109 | chr14:78603877-78634174 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv520241 | chr14:78623134-78634174 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:78623400-78624600 | Enhancers | Brain Germinal Matrix | brain |
