Variant report

Variant	rs73316357
Chromosome Location	chr14:78635590-78635591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17107006	1.00[AMR][1000 genomes]
rs17107009	1.00[AMR][1000 genomes]
rs28542174	1.00[AMR][1000 genomes]
rs28731105	1.00[AMR][1000 genomes]
rs59184512	1.00[AMR][1000 genomes]
rs73308584	1.00[AMR][1000 genomes]
rs73308593	1.00[AMR][1000 genomes]
rs73310308	1.00[AMR][1000 genomes]
rs73316330	1.00[AMR][1000 genomes]
rs73316332	1.00[AMR][1000 genomes]
rs73316335	1.00[AMR][1000 genomes]
rs73316341	1.00[AMR][1000 genomes]
rs73316342	1.00[AMR][1000 genomes]
rs73316345	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316348	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316362	1.00[AMR][1000 genomes]
rs73316371	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316373	1.00[AMR][1000 genomes]
rs73316375	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316376	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322213	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78624600-78635800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78630800-78636400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:78630800-78636800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:78631000-78635800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:78631000-78636400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:78631000-78636400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:78632400-78636800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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