Variant report

Variant	rs17108408
Chromosome Location	chr14:39315995-39315996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10483548	0.81[EUR][1000 genomes]
rs11625785	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108415	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108433	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17605463	0.94[ASN][1000 genomes]
rs1885138	0.93[ASN][1000 genomes]
rs1885139	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1951218	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2093267	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2104092	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144708	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054457	chr14:39114181-39317483	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39312000-39316200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:39312000-39316200	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:39312000-39317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:39315800-39316600	Enhancers	Brain Angular Gyrus	brain
5	chr14:39315800-39317800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:39315800-39319000	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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