Variant report
| Variant | rs2104092 |
|---|---|
| Chromosome Location | chr14:39330733-39330734 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10138508 | 0.82[ASN][1000 genomes] |
| rs11625785 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12100805 | 0.82[ASN][1000 genomes] |
| rs17108408 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17108415 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17108433 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17605463 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1885138 | 0.90[ASN][1000 genomes] |
| rs1885139 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1951218 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1957048 | 0.84[ASN][1000 genomes] |
| rs2093267 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2145604 | 0.83[ASN][1000 genomes] |
| rs2145605 | 0.84[ASN][1000 genomes] |
| rs2180879 | 0.83[ASN][1000 genomes] |
| rs4902223 | 0.81[EUR][1000 genomes] |
| rs56143253 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62001072 | 0.85[ASN][1000 genomes] |
| rs7142768 | 0.84[ASN][1000 genomes] |
| rs7144708 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7145908 | 0.85[ASN][1000 genomes] |
| rs7158719 | 0.84[ASN][1000 genomes] |
| rs988420 | 0.85[ASN][1000 genomes] |
| rs990487 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv564416 | chr14:39140536-39440106 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv470631 | chr14:39153764-39440106 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv3429206 | chr14:39160730-39648836 | Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
| 4 | nsv932194 | chr14:39173578-39411337 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:39329200-39332600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
