Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39345165..39347327-chr14:39348361..39351300,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10138508	0.97[ASN][1000 genomes]
rs11625785	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11626976	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12100805	0.97[ASN][1000 genomes]
rs17108433	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108513	0.88[ASN][1000 genomes]
rs17605463	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1885139	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951218	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957048	0.99[ASN][1000 genomes]
rs2093267	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2104092	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2145604	0.98[ASN][1000 genomes]
rs2145605	0.99[ASN][1000 genomes]
rs2180879	0.98[ASN][1000 genomes]
rs4899111	0.88[ASN][1000 genomes]
rs4902223	0.88[EUR][1000 genomes]
rs56143253	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62001072	1.00[ASN][1000 genomes]
rs62001076	0.88[ASN][1000 genomes]
rs7142768	0.99[ASN][1000 genomes]
rs7144708	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145908	1.00[ASN][1000 genomes]
rs7156334	0.81[EUR][1000 genomes]
rs7158719	0.99[ASN][1000 genomes]
rs7160241	0.94[ASN][1000 genomes]
rs988420	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39338400-39348200	Weak transcription	Pancreas	Pancrea
2	chr14:39339000-39347400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:39339000-39350200	Weak transcription	Brain Anterior Caudate	brain
4	chr14:39340000-39346600	Weak transcription	Brain Angular Gyrus	brain
5	chr14:39343000-39346600	Weak transcription	Adipose Nuclei	Adipose
6	chr14:39343600-39348200	Weak transcription	Psoas Muscle	Psoas
7	chr14:39344000-39347600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr14:39344800-39349600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr14:39345200-39347200	Weak transcription	Brain Substantia Nigra	brain
10	chr14:39345200-39348000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr14:39345800-39349600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:39346000-39347000	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:39346200-39346800	Enhancers	Lung	lung

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