Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10138508	0.97[ASN][1000 genomes]
rs11625785	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11626976	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12100805	0.97[ASN][1000 genomes]
rs17108433	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108513	0.88[ASN][1000 genomes]
rs17605463	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1885139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951218	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1957048	0.99[ASN][1000 genomes]
rs2093267	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2104092	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2145604	0.98[ASN][1000 genomes]
rs2145605	0.99[ASN][1000 genomes]
rs2180879	0.98[ASN][1000 genomes]
rs4899111	0.88[ASN][1000 genomes]
rs4902223	0.87[EUR][1000 genomes]
rs62001072	1.00[ASN][1000 genomes]
rs62001076	0.88[ASN][1000 genomes]
rs7142768	0.99[ASN][1000 genomes]
rs7144708	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145908	1.00[ASN][1000 genomes]
rs7158719	0.99[ASN][1000 genomes]
rs7160241	0.94[ASN][1000 genomes]
rs988420	1.00[ASN][1000 genomes]
rs990487	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39334800-39339000	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:39334800-39340000	Enhancers	Brain Hippocampus Middle	brain
3	chr14:39334800-39340200	Enhancers	Brain Substantia Nigra	brain
4	chr14:39336600-39339800	Enhancers	Stomach Mucosa	stomach
5	chr14:39336600-39340000	Enhancers	Fetal Kidney	kidney
6	chr14:39336800-39339200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:39337000-39342400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:39337400-39339000	Enhancers	Fetal Lung	lung
9	chr14:39337400-39339000	Enhancers	HUVEC	blood vessel
10	chr14:39338200-39338800	Enhancers	Gastric	stomach
11	chr14:39338200-39338800	Enhancers	HepG2	liver
12	chr14:39338400-39338800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:39338400-39339000	Enhancers	Brain Angular Gyrus	brain
14	chr14:39338400-39339000	Enhancers	Brain Anterior Caudate	brain
15	chr14:39338400-39348200	Weak transcription	Pancreas	Pancrea
16	chr14:39338600-39339000	Enhancers	Liver	Liver
17	chr14:39338600-39339000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr14:39338600-39339200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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