Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11625785	0.82[ASN][1000 genomes]
rs11626976	0.87[ASN][1000 genomes]
rs12100805	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17108433	0.83[ASN][1000 genomes]
rs17108513	0.87[ASN][1000 genomes]
rs17605463	0.82[ASN][1000 genomes]
rs1885139	0.82[ASN][1000 genomes]
rs1951218	0.84[ASN][1000 genomes]
rs1957048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2093267	0.82[ASN][1000 genomes]
rs2104092	0.82[ASN][1000 genomes]
rs2145604	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145605	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2180879	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899111	0.87[ASN][1000 genomes]
rs56143253	0.97[ASN][1000 genomes]
rs62001072	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62001076	0.87[ASN][1000 genomes]
rs7142768	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145908	0.97[ASN][1000 genomes]
rs7158719	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160241	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs988420	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs990487	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39350600-39354600	Weak transcription	Brain Substantia Nigra	brain
2	chr14:39350600-39369600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:39351400-39352200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39352000-39354000	Enhancers	HepG2	liver

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