Variant report

Variant	rs17111611
Chromosome Location	chr14:81722237-81722238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81685084..81689489-chr14:81718183..81722671,5	K562	blood:
2	chr14:81719962..81722776-chr14:81729906..81732406,2	MCF-7	breast:
3	chr14:81683519..81693455-chr14:81706363..81723125,33	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10137342	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10145323	1.00[JPT][hapmap]
rs12437268	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs17094177	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17111607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111651	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17111691	1.00[JPT][hapmap]
rs17631893	1.00[CEU][hapmap]
rs2033255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3815952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs728458	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714000-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81714000-81725800	Weak transcription	NHEK	skin
3	chr14:81714200-81725600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81714200-81726000	Weak transcription	HMEC	breast
5	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:81714400-81725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:81714400-81734000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:81714600-81725400	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:81714600-81726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:81714800-81726200	Weak transcription	Placenta	Placenta
11	chr14:81715200-81723000	Weak transcription	Dnd41	blood
12	chr14:81719800-81735600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:81720200-81722600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr14:81720800-81723000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:81721200-81735600	Weak transcription	Brain Anterior Caudate	brain
16	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:81721600-81733400	Weak transcription	K562	blood
19	chr14:81721600-81739800	Weak transcription	Ovary	ovary
20	chr14:81722200-81722400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:81722200-81723600	Enhancers	Primary B cells from peripheral blood	blood

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