Variant report

Variant	rs17111651
Chromosome Location	chr14:81743022-81743023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81687510..81689760-chr14:81742676..81747496,4	MCF-7	breast:
2	chr14:81740817..81743318-chr14:81743948..81746611,2	MCF-7	breast:
3	chr14:81685475..81687866-chr14:81737808..81743096,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10137342	1.00[JPT][hapmap]
rs10145323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12437268	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17094177	1.00[JPT][hapmap]
rs17111611	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17111627	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17111691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17631893	1.00[CEU][hapmap]
rs2033255	1.00[JPT][hapmap]
rs36017951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815952	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
4	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
5	chr14:81730600-81744000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:81730800-81743600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:81732400-81743600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
9	chr14:81734800-81743400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:81734800-81744000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:81736000-81743400	Weak transcription	Fetal Intestine Large	intestine
14	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:81736400-81746600	Weak transcription	Liver	Liver
16	chr14:81737000-81744200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr14:81737600-81748000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:81738600-81743400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:81739200-81743800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:81739600-81743800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:81740200-81744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:81740400-81743400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:81740400-81743400	Weak transcription	Esophagus	oesophagus
24	chr14:81740600-81743200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:81740600-81743600	Strong transcription	NHEK	skin
26	chr14:81740800-81745200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:81741000-81743200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:81741400-81743400	Weak transcription	Gastric	stomach
29	chr14:81741600-81744400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:81741800-81743200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:81741800-81743400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:81741800-81743800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:81741800-81744400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:81741800-81744800	Strong transcription	K562	blood
35	chr14:81741800-81768400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr14:81742000-81743600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:81742000-81743800	Genic enhancers	Fetal Muscle Leg	muscle
38	chr14:81742000-81743800	Enhancers	HepG2	liver
39	chr14:81742000-81744000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:81742000-81745000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr14:81742200-81745000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:81742400-81743200	Enhancers	Brain Cingulate Gyrus	brain
43	chr14:81742400-81743200	Genic enhancers	Fetal Intestine Small	intestine
44	chr14:81742400-81743400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:81742400-81743600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr14:81742400-81744600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:81742600-81743200	Enhancers	Brain Substantia Nigra	brain
48	chr14:81742600-81743200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr14:81742600-81743400	Enhancers	GM12878-XiMat	blood
50	chr14:81742600-81743600	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links