Variant report

Variant	rs17114167
Chromosome Location	chr1:57098463-57098464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10157962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206969	1.00[EUR][1000 genomes]
rs2206970	1.00[EUR][1000 genomes]
rs2223779	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2746346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796497	0.91[EUR][1000 genomes]
rs2796502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796526	0.91[EUR][1000 genomes]
rs2796535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2796536	1.00[EUR][1000 genomes]
rs2796543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857131	1.00[EUR][1000 genomes]
rs857133	0.91[EUR][1000 genomes]
rs857149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs857158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57092400-57098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:57098200-57098800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:57098200-57099000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:57098200-57099000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:57098200-57099400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:57098400-57099000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:57098400-57103800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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