Variant report
| Variant | rs2796536 |
|---|---|
| Chromosome Location | chr1:57076536-57076537 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10157962 | 1.00[EUR][1000 genomes] |
| rs12085402 | 1.00[EUR][1000 genomes] |
| rs17114167 | 1.00[EUR][1000 genomes] |
| rs2206969 | 1.00[EUR][1000 genomes] |
| rs2206970 | 1.00[EUR][1000 genomes] |
| rs2223779 | 1.00[EUR][1000 genomes] |
| rs2404995 | 1.00[EUR][1000 genomes] |
| rs2746337 | 1.00[EUR][1000 genomes] |
| rs2746341 | 1.00[EUR][1000 genomes] |
| rs2746346 | 1.00[EUR][1000 genomes] |
| rs2796494 | 1.00[EUR][1000 genomes] |
| rs2796497 | 0.91[EUR][1000 genomes] |
| rs2796502 | 1.00[EUR][1000 genomes] |
| rs2796503 | 1.00[EUR][1000 genomes] |
| rs2796504 | 1.00[EUR][1000 genomes] |
| rs2796505 | 1.00[EUR][1000 genomes] |
| rs2796508 | 1.00[EUR][1000 genomes] |
| rs2796510 | 1.00[EUR][1000 genomes] |
| rs2796524 | 1.00[EUR][1000 genomes] |
| rs2796525 | 1.00[EUR][1000 genomes] |
| rs2796526 | 0.91[EUR][1000 genomes] |
| rs2796535 | 1.00[EUR][1000 genomes] |
| rs2796543 | 1.00[EUR][1000 genomes] |
| rs857131 | 1.00[EUR][1000 genomes] |
| rs857133 | 0.91[EUR][1000 genomes] |
| rs857149 | 1.00[EUR][1000 genomes] |
| rs857154 | 1.00[EUR][1000 genomes] |
| rs857158 | 1.00[EUR][1000 genomes] |
| rs963527 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869295 | chr1:56894955-57656562 | Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57076000-57076600 | Enhancers | HepG2 | liver |
