Variant report
| Variant | rs17127987 |
|---|---|
| Chromosome Location | chr14:55294104-55294105 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:55293129..55294978-chr14:55368791..55371279,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131979 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13329058 | 1.00[ASN][1000 genomes] |
| rs17127944 | 1.00[CHB][hapmap] |
| rs17127998 | 1.00[ASN][1000 genomes] |
| rs17128017 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17253577 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs17253584 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs2004633 | 0.86[ASN][1000 genomes] |
| rs2183080 | 1.00[CHB][hapmap] |
| rs35508671 | 1.00[AMR][1000 genomes] |
| rs45454691 | 0.86[ASN][1000 genomes] |
| rs55786710 | 1.00[ASN][1000 genomes] |
| rs58292420 | 0.83[ASN][1000 genomes] |
| rs60407360 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60475452 | 1.00[AMR][1000 genomes] |
| rs60481635 | 1.00[ASN][1000 genomes] |
| rs7147200 | 1.00[ASN][1000 genomes] |
| rs7153186 | 1.00[ASN][1000 genomes] |
| rs7153566 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73276810 | 0.83[ASN][1000 genomes] |
| rs73276819 | 0.83[ASN][1000 genomes] |
| rs73278756 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73278762 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73278771 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73278772 | 0.86[ASN][1000 genomes] |
| rs73278793 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9323271 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530042 | chr14:55208170-55386966 | Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:55293800-55306400 | Weak transcription | Aorta | Aorta |
