Variant report

Variant	rs17128143
Chromosome Location	chr14:55533588-55533589
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55523912..55526776-chr14:55532396..55534870,2	K562	blood:
2	chr14:55524853..55528129-chr14:55532320..55535008,3	MCF-7	breast:
3	chr14:55488106..55490294-chr14:55532250..55534527,2	MCF-7	breast:
4	chr14:55532973..55535677-chr14:55615169..55617966,2	MCF-7	breast:
5	chr14:55532764..55536002-chr14:55540824..55544423,3	MCF-7	breast:
6	chr14:55533388..55535335-chr14:55617293..55618856,2	K562	blood:
7	chr14:55516948..55521248-chr14:55532171..55537345,7	K562	blood:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11845908	1.00[CHD][hapmap]
rs1354	1.00[CHD][hapmap]
rs17128147	0.91[ASW][hapmap];0.88[YRI][hapmap]
rs17672376	1.00[CHD][hapmap]
rs17851309	0.87[CEU][hapmap];1.00[CHD][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45513892	1.00[ASN][1000 genomes]
rs7146775	1.00[CHD][hapmap]
rs7147147	1.00[CHD][hapmap]
rs72716646	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17128143	SOCS4	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519600-55534400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
4	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:55520600-55533600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:55520600-55535000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
8	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
9	chr14:55520800-55534800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:55520800-55535200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:55521600-55535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:55521600-55535400	Strong transcription	NHEK	skin
13	chr14:55522000-55535600	Strong transcription	Fetal Thymus	thymus
14	chr14:55522600-55536600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:55523600-55533600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:55523600-55535200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr14:55524200-55535400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:55524400-55536600	Strong transcription	Osteobl	bone
19	chr14:55524600-55533600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr14:55524600-55533600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:55524600-55534800	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr14:55524800-55535600	Strong transcription	A549	lung
23	chr14:55524800-55535800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:55526000-55534800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:55526200-55536000	Strong transcription	Primary hematopoietic stem cells	blood
26	chr14:55526400-55538000	Weak transcription	Small Intestine	intestine
27	chr14:55526600-55535800	Strong transcription	Dnd41	blood
28	chr14:55526600-55537600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:55526600-55538400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:55527200-55533600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:55527400-55535200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:55527600-55533600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:55527600-55534800	Strong transcription	HUVEC	blood vessel
34	chr14:55527800-55533600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr14:55528000-55534600	Strong transcription	NH-A	brain
36	chr14:55528200-55534600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:55528600-55534200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:55529200-55533600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr14:55529400-55533800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr14:55529400-55535000	Strong transcription	Primary B cells from cord blood	blood
41	chr14:55529400-55536800	Strong transcription	HSMM	muscle
42	chr14:55529400-55538400	Weak transcription	Fetal Heart	heart
43	chr14:55529600-55535200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:55529800-55534800	Strong transcription	Liver	Liver
45	chr14:55529800-55538000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:55530000-55535000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:55530000-55538000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:55530000-55538000	Weak transcription	Brain Angular Gyrus	brain
49	chr14:55530000-55538000	Weak transcription	Left Ventricle	heart
50	chr14:55530000-55538000	Weak transcription	Lung	lung

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