Variant report

Variant	rs17128147
Chromosome Location	chr14:55537751-55537752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55537620..55541123-chr14:55657205..55659374,4	MCF-7	breast:
2	chr14:55537560..55539994-chr14:55540251..55542557,2	K562	blood:
3	chr14:55536769..55540247-chr14:55595569..55598545,3	MCF-7	breast:
4	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000126787	Chromatin interaction

rs_ID	r²[population]
rs11850914	0.92[LWK][hapmap]
rs17128143	0.91[ASW][hapmap];0.88[YRI][hapmap]
rs35954941	0.86[EUR][1000 genomes]
rs58481989	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715588	1.00[EUR][1000 genomes]
rs72715590	1.00[EUR][1000 genomes]
rs72715591	1.00[EUR][1000 genomes]
rs72715592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716642	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716643	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716648	1.00[EUR][1000 genomes]
rs72716652	1.00[EUR][1000 genomes]
rs72716654	1.00[EUR][1000 genomes]
rs72716661	1.00[EUR][1000 genomes]
rs72716663	0.86[EUR][1000 genomes]
rs72716665	0.86[EUR][1000 genomes]
rs72716666	0.86[EUR][1000 genomes]
rs72716668	0.86[EUR][1000 genomes]
rs72716676	0.86[EUR][1000 genomes]
rs72716677	0.86[EUR][1000 genomes]
rs72716678	0.86[EUR][1000 genomes]
rs72716681	0.86[EUR][1000 genomes]
rs72716688	0.86[EUR][1000 genomes]
rs72716690	0.86[EUR][1000 genomes]
rs72716692	0.86[EUR][1000 genomes]
rs72716698	0.86[EUR][1000 genomes]
rs72718806	0.86[EUR][1000 genomes]
rs72718810	0.86[EUR][1000 genomes]
rs72718813	0.86[EUR][1000 genomes]
rs72718815	0.86[EUR][1000 genomes]
rs72718818	0.86[EUR][1000 genomes]

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
3	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
5	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
6	chr14:55526400-55538000	Weak transcription	Small Intestine	intestine
7	chr14:55526600-55538400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:55529400-55538400	Weak transcription	Fetal Heart	heart
9	chr14:55529800-55538000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:55530000-55538000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:55530000-55538000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:55530000-55538000	Weak transcription	Left Ventricle	heart
13	chr14:55530000-55538000	Weak transcription	Lung	lung
14	chr14:55530000-55538400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:55530000-55538400	Weak transcription	Pancreas	Pancrea
16	chr14:55530000-55538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:55530000-55538600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:55530000-55538600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:55530000-55538600	Weak transcription	Ovary	ovary
20	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
21	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
22	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:55530200-55538000	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:55530200-55538000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:55530400-55538800	Weak transcription	Fetal Stomach	stomach
26	chr14:55530600-55538000	Weak transcription	Brain Anterior Caudate	brain
27	chr14:55530600-55538000	Weak transcription	Spleen	Spleen
28	chr14:55530600-55538200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr14:55530600-55538200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:55530600-55538200	Weak transcription	HSMMtube	muscle
31	chr14:55530600-55538400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:55530600-55538600	Weak transcription	Fetal Brain Female	brain
33	chr14:55530600-55538600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:55530600-55538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:55530600-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:55530800-55538000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
38	chr14:55531000-55539000	Weak transcription	Fetal Intestine Small	intestine
39	chr14:55531000-55539200	Weak transcription	Thymus	Thymus
40	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:55531600-55541200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr14:55531800-55538000	Weak transcription	HMEC	breast
43	chr14:55531800-55538600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr14:55532400-55538000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:55532400-55538200	Weak transcription	NHLF	lung
46	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
47	chr14:55532600-55538000	Weak transcription	Aorta	Aorta
48	chr14:55532600-55538400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:55532600-55538400	Weak transcription	Fetal Lung	lung
50	chr14:55532600-55538600	Weak transcription	Rectal Mucosa Donor 31	rectum

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