Variant report

Variant	rs72716663
Chromosome Location	chr14:55574270-55574271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
2	chr14:55573704..55575729-chr14:55607371..55609578,2	MCF-7	breast:
3	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
4	chr14:55493296..55494943-chr14:55572481..55574977,2	K562	blood:
5	chr14:55516672..55519453-chr14:55571977..55574471,2	K562	blood:
6	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
7	chr14:55573563..55575807-chr14:55587577..55589248,2	K562	blood:
8	chr14:55572892..55577828-chr14:55580219..55584664,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000180008	Chromatin interaction
ENSG00000198554	Chromatin interaction
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17128147	0.86[EUR][1000 genomes]
rs35954941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58481989	0.86[EUR][1000 genomes]
rs72715588	0.86[EUR][1000 genomes]
rs72715590	0.86[EUR][1000 genomes]
rs72715591	0.86[EUR][1000 genomes]
rs72715592	0.86[EUR][1000 genomes]
rs72715705	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715707	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715716	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715743	1.00[AMR][1000 genomes]
rs72715749	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715750	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715752	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715756	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715758	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715763	1.00[AMR][1000 genomes]
rs72715765	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715773	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715777	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715782	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72715784	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716642	0.86[EUR][1000 genomes]
rs72716643	0.86[EUR][1000 genomes]
rs72716648	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716652	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716654	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716661	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72716692	1.00[EUR][1000 genomes]
rs72716698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718810	1.00[EUR][1000 genomes]
rs72718813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718819	1.00[AMR][1000 genomes]
rs72718821	1.00[AMR][1000 genomes]
rs72718822	1.00[AMR][1000 genomes]
rs72718824	1.00[AMR][1000 genomes]
rs72718831	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718835	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718837	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718840	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718843	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718844	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718845	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718846	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718847	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718850	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72718856	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:55569200-55574800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55569200-55574800	Weak transcription	Gastric	stomach
5	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
6	chr14:55570400-55575800	Enhancers	Fetal Intestine Small	intestine
7	chr14:55570800-55574400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:55570800-55574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:55571000-55574400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:55571000-55574400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:55571000-55574800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:55571000-55574800	Weak transcription	Psoas Muscle	Psoas
13	chr14:55571200-55575000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:55571400-55574400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr14:55571600-55574400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:55571600-55574400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr14:55571600-55574400	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:55571600-55574400	Weak transcription	Fetal Thymus	thymus
19	chr14:55571600-55574400	Weak transcription	Pancreas	Pancrea
20	chr14:55571600-55574400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:55571600-55574600	Weak transcription	Placenta	Placenta
22	chr14:55571600-55574800	Weak transcription	Esophagus	oesophagus
23	chr14:55571800-55574600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:55572200-55574400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:55572400-55574400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:55572400-55575800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr14:55572600-55574400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:55572600-55574400	Enhancers	Adipose Nuclei	Adipose
29	chr14:55572600-55574400	Enhancers	NHDF-Ad	bronchial
30	chr14:55572600-55574400	Enhancers	NHLF	lung
31	chr14:55572600-55574600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:55572600-55574800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:55572600-55575200	Enhancers	Colon Smooth Muscle	Colon
34	chr14:55572800-55574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:55572800-55574400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:55572800-55574400	Enhancers	HSMMtube	muscle
37	chr14:55572800-55575600	Enhancers	Ovary	ovary
38	chr14:55573000-55574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:55573000-55574400	Weak transcription	Brain Angular Gyrus	brain
40	chr14:55573000-55574400	Weak transcription	Brain Substantia Nigra	brain
41	chr14:55573000-55574400	Enhancers	HepG2	liver
42	chr14:55573000-55574600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:55573200-55574800	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr14:55573200-55575600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:55573400-55574400	Weak transcription	Fetal Lung	lung
46	chr14:55573600-55575000	Enhancers	Small Intestine	intestine
47	chr14:55573600-55575200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr14:55573600-55575200	Enhancers	Spleen	Spleen
49	chr14:55573600-55575400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr14:55573800-55574400	Enhancers	Rectal Mucosa Donor 29	rectum

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